Registro:
Título en inglés:
Chromosomal - level genome assembly of potato tuberworm, phthorimaea operculella : a pest of solanaceous crops
Autor/es:
Zhang, Mengdi; Cheng, Xinyue; Lin, Runmao; Xie, Bingyan; Nauen, Ralf; Rondon, Silvia I.; Zavala, Jorge Alberto; Palli, Subba Reddy
Filiación:
Zhang, Mengdi. Chinese Academy of Agricultural Sciences. Institute of Plant Protection. State Key Laboratory for Biology of Plant Diseases and Insect Pests. Beijing, China.
Cheng, Xinyue. Beijing Normal University. College of Life Sciences. Beijing, China.
Lin, Runmao. Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers. Beijing, China.
Lin, Runmao. Hainan University. College of Plant Protection. Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests Ministry of Education. Haikou, China.
Xie, Bingyan. Chinese Academy of Agricultural Sciences. Institute of Vegetables and Flowers. Beijing, China.
Nauen, Ralf. Bayer AG. Crop Science Division. R and D, Monheim, Germany.
Rondon, Silvia I. Oregon State University. Hermiston Agricultural Research and Extension Center. Hermiston, Oregon, USA.
Zavala, Jorge Alberto. Universidad de Buenos Aires. Facultad de Agronomía. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.
Zavala, Jorge Alberto. CONICET – Universidad de Buenos Aires. Facultad de Agronomía. Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA). Buenos Aires, Argentina.
Palli, Subba Reddy. University of Kentucky. Department of Entomology. Lexington, Kentucky, USA.
Título revista:
Scientific Data
ISSN:
2052-4463 (en línea)
Temas:
POTATO TUBERWORM; PHTHORIMAEA OPERCULELLA; GENOME ASSEMBLY; CHROMOSOMAL LEVEL; PEST MANAGEMENT
Resumen:
The potato tuberworm, Phthorimaea operculella Zeller, is an oligophagous pest feeding on crops mainly belonging to the family Solanaceae. It is one of the most destructive pests of potato worldwide and attacks foliage and tubers in the field and in storage. However, the lack of a high - quality reference genome has hindered the association of phenotypic traits with their genetic basis. Here, we report on the genome assembly of P. operculella at the chromosomal level. Using Illumina, Nanopore and Hi-C sequencing, a 648.2Mb genome was generated from 665 contigs, with an N50 length of 3.2Mb, and 92.0% (596/648.2Mb) of the assembly was anchored to 29 chromosomes. In total, 16619 genes were annotated, and 92.4% of BUSCO genes were fully represented. The chromosome - level genome of P. operculella will provide a significant resource for understanding the genetic basis for the biological study of this insect, and for promoting the integrative management of this pest in future.
Citación:
---------- APA ----------
Zhang, Mengdi; Cheng, Xinyue; Lin, Runmao; Xie, Bingyan; Nauen, Ralf; Rondon, Silvia I.; Zavala, Jorge Alberto; Palli, Subba Reddy (2022).Chromosomal - level genome assembly of potato tuberworm, phthorimaea operculella : a pest of solanaceous crops.Scientific Data,9, (748),[11 p.]
10.1038/s41597-022-01859-5
---------- CHICAGO ----------
Zhang, Mengdi,Cheng, Xinyue,Lin, Runmao,Xie, Bingyan,Nauen, Ralf,Rondon, Silvia I., et al..2022. "Chromosomal - level genome assembly of potato tuberworm, phthorimaea operculella : a pest of solanaceous crops".Scientific Data 9, no.748:[11 p.].
Recuperado de http://ri.agro.uba.ar/greenstone3/library/collection/arti/document/2022zhang